IL_28LN_219

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

28LN|1|B5|A|4202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_219 not in the Motif Atlas

Geometric match to IL_1CSL_002

Geometric discrepancy: 0.358

The information below is about IL_1CSL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

28LN|1|B5|G|4190
28LN|1|B5|A|4191
*
28LN|1|B5|U|4201
28LN|1|B5|A|4202
28LN|1|B5|C|4203

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BT

60S ribosomal protein L21

Chain Bo

Large ribosomal subunit protein eL42