IL_28LN_228

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

28LN|1|B5|G|4521, 28LN|1|B5|A2M|4522

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|OMC|4455
28LN|1|B5|PSU|4456
28LN|1|B5|C|4457
*
28LN|1|B5|G|4519
28LN|1|B5|PSU|4520
28LN|1|B5|G|4521
28LN|1|B5|A2M|4522
28LN|1|B5|G|4523

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B1

Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form

Chain BB

Large ribosomal subunit protein uL3

Chain BV

60S ribosomal protein L23