IL_28LN_228
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (OMC)(PSU)C*G(PSU)G(A2M)G
- Length
- 8 nucleotides
- Bulged bases
- 28LN|1|B5|G|4521, 28LN|1|B5|A2M|4522
- QA status
- Modified nucleotides: OMC, PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_228 not in the Motif Atlas
- Homologous match to IL_9H3G_122
- Geometric discrepancy: 0.0768
- The information below is about IL_9H3G_122
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30722.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
28LN|1|B5|OMC|4455
28LN|1|B5|PSU|4456
28LN|1|B5|C|4457
*
28LN|1|B5|G|4519
28LN|1|B5|PSU|4520
28LN|1|B5|G|4521
28LN|1|B5|A2M|4522
28LN|1|B5|G|4523
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B1
- Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form
- Chain BB
- Large ribosomal subunit protein uL3
- Chain BV
- 60S ribosomal protein L23
Coloring options: