IL_28LN_237

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(A2M)UC*(OMG)U(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_237 not in the Motif Atlas

Homologous match to IL_8GLP_316

Geometric discrepancy: 0.1116

The information below is about IL_8GLP_316

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

28LN|1|B5|A2M|4589
28LN|1|B5|U|4590
28LN|1|B5|C|4591
*
28LN|1|B5|OMG|4617
28LN|1|B5|U|4618
28LN|1|B5|OMU|4619

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BV

60S ribosomal protein L23