IL_28LN_242

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

28LN|1|B5|A|4655, 28LN|1|B5|U|4656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_242 not in the Motif Atlas

Homologous match to IL_8GLP_163

Geometric discrepancy: 0.1143

The information below is about IL_8GLP_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

28LN|1|B5|U|4640
28LN|1|B5|U|4641
*
28LN|1|B5|A|4654
28LN|1|B5|A|4655
28LN|1|B5|U|4656
28LN|1|B5|G|4657

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain Bd

60S ribosomal protein L31