IL_28LN_243

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

28LN|1|B5|A|4707

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_243 not in the Motif Atlas

Homologous match to IL_9H3G_133

Geometric discrepancy: 0.1743

The information below is about IL_9H3G_133

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

28LN|1|B5|A|4680
28LN|1|B5|U|4681
28LN|1|B5|U|4682
28LN|1|B5|A|4683
28LN|1|B5|U|4684
*
28LN|1|B5|A|4704
28LN|1|B5|G|4705
28LN|1|B5|A|4706
28LN|1|B5|A|4707
28LN|1|B5|U|4708

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

60S ribosomal protein L13a

Chain Bm

Ubiquitin-60S ribosomal protein L40