IL_28LN_256

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

28LN|1|B5|G|5040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_256 not in the Motif Atlas

Homologous match to IL_8GLP_176

Geometric discrepancy: 0.0951

The information below is about IL_8GLP_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|U|5002
28LN|1|B5|C|5003
28LN|1|B5|G|5004
28LN|1|B5|U|5005
28LN|1|B5|A|5006
28LN|1|B5|C|5007
28LN|1|B5|G|5008
*
28LN|1|B5|U|5038
28LN|1|B5|U|5039
28LN|1|B5|G|5040
28LN|1|B5|A|5041
28LN|1|B5|A|5042
28LN|1|B5|A|5043

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BW

60S ribosomal protein L24

Chain Bd

60S ribosomal protein L31