IL_28LN_258
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_258 not in the Motif Atlas
- Homologous match to IL_8GLP_179
- Geometric discrepancy: 0.1566
- The information below is about IL_8GLP_179
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
28LN|1|B5|A|5013
28LN|1|B5|G|5014
28LN|1|B5|A|5015
28LN|1|B5|G|5016
*
28LN|1|B5|C|5031
28LN|1|B5|G|5032
28LN|1|B5|A|5033
28LN|1|B5|U|5034
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AI
- 40S ribosomal protein S8
- Chain BR
- 60S ribosomal protein L19
- Chain BU
- 60S ribosomal protein L22
Coloring options: