IL_28LN_263
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUAGUAC*GGAAUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_263 not in the Motif Atlas
- Homologous match to IL_4V9F_106
- Geometric discrepancy: 0.1919
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
28LN|1|B7|U|72
28LN|1|B7|U|73
28LN|1|B7|A|74
28LN|1|B7|G|75
28LN|1|B7|U|76
28LN|1|B7|A|77
28LN|1|B7|C|78
*
28LN|1|B7|G|98
28LN|1|B7|G|99
28LN|1|B7|A|100
28LN|1|B7|A|101
28LN|1|B7|U|102
28LN|1|B7|A|103
Current chains
- Chain B7
- 5S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 60S ribosomal protein L5
- Chain BF
- Large ribosomal subunit protein uL30
- Chain BI
- 60S ribosomal protein L10
- Chain BS
- 60S ribosomal protein L18a
- Chain BT
- 60S ribosomal protein L21
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