IL_28UH_049

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

28UH|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UH_049 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.0603

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

28UH|1|A|G|1124
28UH|1|A|U|1125
28UH|1|A|U|1126
28UH|1|A|G|1127
28UH|1|A|C|1128
*
28UH|1|A|G|1144
28UH|1|A|A|1145
28UH|1|A|A|1146
28UH|1|A|C|1147
28UH|1|A|U|1148
28UH|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10