IL_28UH_129

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

28UH|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UH_129 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0389

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

28UH|1|a|U|1712
28UH|1|a|A|1713
28UH|1|a|U|1714
28UH|1|a|G|1715
28UH|1|a|U|1716
28UH|1|a|A|1717
28UH|1|a|G|1718
*
28UH|1|a|U|1742
28UH|1|a|G|1743
28UH|1|a|A|1744
28UH|1|a|A|1745
28UH|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains