IL_28UH_153

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

28UH|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UH_153 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2262

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

28UH|1|a|A|2459
28UH|1|a|U|2460
28UH|1|a|A|2461
*
28UH|1|a|U|2489
28UH|1|a|G|2490
28UH|1|a|U|2491
28UH|1|a|U|2492
28UH|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain l

Large ribosomal subunit protein uL16