IL_28UI_086
3D structure
- PDB id
- 28UI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 28UI|1|a|G|776, 28UI|1|a|A|788, 28UI|1|a|A|789, 28UI|1|a|U|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UI_086 not in the Motif Atlas
- Geometric match to IL_9E6Q_032
- Geometric discrepancy: 0.0361
- The information below is about IL_9E6Q_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
28UI|1|a|G|775
28UI|1|a|G|776
28UI|1|a|G|777
*
28UI|1|a|C|787
28UI|1|a|A|788
28UI|1|a|A|789
28UI|1|a|U|790
28UI|1|a|C|791
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
- Chain e
- Large ribosomal subunit protein uL4
- Chain r
- Large ribosomal subunit protein uL22
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