IL_9E6Q_032

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGG*CAA(OMU)C

Length

8 nucleotides

Bulged bases

9E6Q|1|1|G|894, 9E6Q|1|1|A|906, 9E6Q|1|1|A|907, 9E6Q|1|1|OMU|908

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9E6Q|1|1|G|893
9E6Q|1|1|G|894
9E6Q|1|1|G|895
*
9E6Q|1|1|C|905
9E6Q|1|1|A|906
9E6Q|1|1|A|907
9E6Q|1|1|OMU|908
9E6Q|1|1|C|909

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AA

Large ribosomal subunit protein uL2

Chain AM

50S ribosomal protein L15e

Chain AT

Large ribosomal subunit protein uL22

Chain Ad

Large ribosomal subunit protein eL37