IL_28UI_099
3D structure
- PDB id
- 28UI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UCCCAAAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UI_099 not in the Motif Atlas
- Homologous match to IL_7A0S_034
- Geometric discrepancy: 0.1578
- The information below is about IL_7A0S_034
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_46868.2
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
28UI|1|a|U|1004
28UI|1|a|C|1005
28UI|1|a|C|1006
28UI|1|a|C|1007
28UI|1|a|A|1008
28UI|1|a|A|1009
28UI|1|a|A|1010
28UI|1|a|G|1011
*
28UI|1|a|C|1150
28UI|1|a|A|1151
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain i
- Large ribosomal subunit protein uL13
- Chain p
- Large ribosomal subunit protein bL20
Coloring options: