IL_28UI_153
3D structure
- PDB id
- 28UI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- AUA*UGUUU
- Length
- 8 nucleotides
- Bulged bases
- 28UI|1|a|U|2491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UI_153 not in the Motif Atlas
- Homologous match to IL_7A0S_086
- Geometric discrepancy: 0.3521
- The information below is about IL_7A0S_086
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.4
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 25
Unit IDs
28UI|1|a|A|2459
28UI|1|a|U|2460
28UI|1|a|A|2461
*
28UI|1|a|U|2489
28UI|1|a|G|2490
28UI|1|a|U|2491
28UI|1|a|U|2492
28UI|1|a|U|2493
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain d
- Large ribosomal subunit protein uL3
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
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