IL_28UJ_019
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_019 not in the Motif Atlas
- Geometric match to IL_8B0X_019
- Geometric discrepancy: 0.1884
- The information below is about IL_8B0X_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
28UJ|1|A|U|409
28UJ|1|A|G|410
28UJ|1|A|A|411
28UJ|1|A|A|412
28UJ|1|A|G|413
28UJ|1|A|A|414
28UJ|1|A|A|415
28UJ|1|A|G|416
*
28UJ|1|A|U|427
28UJ|1|A|G|428
28UJ|1|A|U|429
28UJ|1|A|A|430
28UJ|1|A|A|431
28UJ|1|A|A|432
28UJ|1|A|G|433
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
Coloring options: