IL_28UJ_022
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_022 not in the Motif Atlas
- Homologous match to IL_6CZR_406
- Geometric discrepancy: 0.521
- The information below is about IL_6CZR_406
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_26564.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
28UJ|1|A|G|450
28UJ|1|A|A|451
28UJ|1|A|A|452
28UJ|1|A|G|453
28UJ|1|A|G|454
28UJ|1|A|G|455
*
28UJ|1|A|C|477
28UJ|1|A|A|478
28UJ|1|A|U|479
28UJ|1|A|U|480
28UJ|1|A|G|481
28UJ|1|A|A|482
28UJ|1|A|C|483
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
Coloring options: