IL_28UJ_040
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 28UJ|1|A|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_040 not in the Motif Atlas
- Homologous match to IL_6CZR_410
- Geometric discrepancy: 0.1538
- The information below is about IL_6CZR_410
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.2
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
28UJ|1|A|G|933
28UJ|1|A|C|934
28UJ|1|A|A|935
*
28UJ|1|A|U|1380
28UJ|1|A|U|1381
28UJ|1|A|C|1382
28UJ|1|A|C|1383
28UJ|1|A|C|1384
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain X
- mRNA
- Chain Z
- Transfer RNA; tRNA
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