IL_28UJ_049

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

28UJ|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UJ_049 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.0645

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

28UJ|1|A|G|1124
28UJ|1|A|U|1125
28UJ|1|A|U|1126
28UJ|1|A|G|1127
28UJ|1|A|C|1128
*
28UJ|1|A|G|1144
28UJ|1|A|A|1145
28UJ|1|A|A|1146
28UJ|1|A|C|1147
28UJ|1|A|U|1148
28UJ|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10