IL_28UJ_080
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 28UJ|1|a|G|801, 28UJ|1|a|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_080 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1108
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.3
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
28UJ|1|a|G|674
28UJ|1|a|A|675
28UJ|1|a|A|676
28UJ|1|a|A|677
28UJ|1|a|C|678
*
28UJ|1|a|G|799
28UJ|1|a|A|800
28UJ|1|a|G|801
28UJ|1|a|A|802
28UJ|1|a|U|803
28UJ|1|a|A|804
28UJ|1|a|G|805
28UJ|1|a|C|806
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
Coloring options: