IL_28UJ_102
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 28UJ|1|a|A|1127, 28UJ|1|a|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_102 not in the Motif Atlas
- Geometric match to IL_8B0X_101
- Geometric discrepancy: 0.033
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
28UJ|1|a|G|1024
28UJ|1|a|G|1025
28UJ|1|a|G|1026
28UJ|1|a|A|1027
28UJ|1|a|A|1028
28UJ|1|a|A|1029
28UJ|1|a|C|1030
*
28UJ|1|a|G|1124
28UJ|1|a|G|1125
28UJ|1|a|A|1126
28UJ|1|a|A|1127
28UJ|1|a|G|1128
28UJ|1|a|A|1129
28UJ|1|a|U|1130
28UJ|1|a|G|1131
28UJ|1|a|U|1132
28UJ|1|a|A|1133
28UJ|1|a|A|1134
28UJ|1|a|C|1135
28UJ|1|a|G|1136
28UJ|1|a|G|1137
28UJ|1|a|G|1138
28UJ|1|a|G|1139
28UJ|1|a|C|1140
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: