IL_28UJ_129

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

28UJ|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UJ_129 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0418

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

28UJ|1|a|U|1712
28UJ|1|a|A|1713
28UJ|1|a|U|1714
28UJ|1|a|G|1715
28UJ|1|a|U|1716
28UJ|1|a|A|1717
28UJ|1|a|G|1718
*
28UJ|1|a|U|1742
28UJ|1|a|G|1743
28UJ|1|a|A|1744
28UJ|1|a|A|1745
28UJ|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains