IL_28UJ_132
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 28UJ|1|a|A|1801, 28UJ|1|a|C|1816, 28UJ|1|a|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_132 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.0986
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
28UJ|1|a|U|1798
28UJ|1|a|G|1799
28UJ|1|a|C|1800
28UJ|1|a|A|1801
28UJ|1|a|A|1802
28UJ|1|a|A|1803
28UJ|1|a|C|1804
*
28UJ|1|a|G|1813
28UJ|1|a|G|1814
28UJ|1|a|A|1815
28UJ|1|a|C|1816
28UJ|1|a|G|1817
28UJ|1|a|U|1818
28UJ|1|a|A|1819
28UJ|1|a|U|1820
28UJ|1|a|A|1821
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: