IL_28UJ_136

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UJ|1|a|U|1851
28UJ|1|a|U|1852
28UJ|1|a|A|1853
28UJ|1|a|A|1854
28UJ|1|a|U|1855
28UJ|1|a|U|1856
28UJ|1|a|G|1857
28UJ|1|a|A|1858
28UJ|1|a|U|1859
28UJ|1|a|G|1860
*
28UJ|1|a|U|1882
28UJ|1|a|U|1883
28UJ|1|a|G|1884
28UJ|1|a|A|1885
28UJ|1|a|U|1886
28UJ|1|a|C|1887
28UJ|1|a|G|1888
28UJ|1|a|A|1889
28UJ|1|a|A|1890
28UJ|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA