IL_28UJ_160
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 28UJ|1|a|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UJ_160 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.1118
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
28UJ|1|a|C|2636
28UJ|1|a|U|2637
28UJ|1|a|G|2638
28UJ|1|a|A|2639
28UJ|1|a|G|2640
*
28UJ|1|a|C|2774
28UJ|1|a|G|2775
28UJ|1|a|A|2776
28UJ|1|a|G|2777
28UJ|1|a|A|2778
28UJ|1|a|U|2779
28UJ|1|a|G|2780
28UJ|1|a|A|2781
28UJ|1|a|G|2782
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
Coloring options: