IL_28UK_107

3D structure

PDB id

28UK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

28UK|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UK_107 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1802

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

28UK|1|a|C|1208
28UK|1|a|U|1209
28UK|1|a|G|1210
28UK|1|a|C|1211
28UK|1|a|G|1212
28UK|1|a|A|1213
28UK|1|a|A|1214
28UK|1|a|G|1215
*
28UK|1|a|U|1234
28UK|1|a|G|1235
28UK|1|a|G|1236
28UK|1|a|A|1237
28UK|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20