IL_28UL_065
3D structure
- PDB id
- 28UL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UL_065 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.0851
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
28UL|1|a|G|24
28UL|1|a|U|25
28UL|1|a|G|26
28UL|1|a|G|27
28UL|1|a|A|28
28UL|1|a|U|29
28UL|1|a|G|30
*
28UL|1|a|C|510
28UL|1|a|U|511
28UL|1|a|G|512
28UL|1|a|A|513
28UL|1|a|A|514
28UL|1|a|A|515
28UL|1|a|C|516
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: