IL_28UL_116

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

28UL|1|a|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UL_116 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.138

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

28UL|1|a|C|1437
28UL|1|a|U|1438
28UL|1|a|A|1439
28UL|1|a|U|1440
*
28UL|1|a|A|1551
28UL|1|a|A|1552
28UL|1|a|A|1553
28UL|1|a|U|1554
28UL|1|a|G|1555

Current chains

Chain a

23S rRNA

Nearby chains