IL_28UL_147

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UL_147 not in the Motif Atlas

Geometric match to IL_8B0X_147

Geometric discrepancy: 0.06

The information below is about IL_8B0X_147

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

28UL|1|a|A|2297
28UL|1|a|A|2298
28UL|1|a|U|2299
*
28UL|1|a|A|2317
28UL|1|a|G|2318
28UL|1|a|G|2319
28UL|1|a|U|2320
28UL|1|a|U|2321

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

Large ribosomal subunit protein uL5

Chain v

Large ribosomal subunit protein bL27