Motif IL_14250.4 Version IL_14250.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_080 | 7A0S | 0.4523 | 0 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2296 | G | 2297 | U | 2298 | A | 2299 | G | 2300 | * | C | 2276 | A | 2277 | A | 2278 | cWW | ntSH | cWW | |
| 2 | IL_8OI5_100 | 8OI5 | 0.0934 | 0 | 1 | LSU rRNA | A | 2658 | G | 2659 | U | 2660 | A | 2661 | G | 2662 | * | C | 2638 | A | 2639 | U | 2640 | cWW | tSH | cWW | ||
| 3 | IL_9SUM_092 | 9SUM | 0.0558 | 0 | A | LSU rRNA | A | 2586 | G | 2587 | U | 2588 | G | 2589 | G | 2590 | * | C | 2566 | A | 2567 | U | 2568 | cWW | tSH | cWW | ||
| 4 | IL_9PN5_095 | 9PN5 | 0.0000 | 0 | A1 | LSU rRNA | A | 2686 | G | 2687 | U | 2688 | A | 2689 | G | 2690 | * | C | 2666 | A | 2667 | U | 2668 | cWW | tSH | cWW | ||
| 5 | IL_8GLP_138 | 8GLP | 0.0539 | 0 | Isolated tHS basepair with bulges (H) | L5 | LSU rRNA | C | 4263 | G | 4264 | U | 4265 | G | 4266 | G | 4267 | * | C | 4243 | A | 4244 | G | 4245 | cWW | tSH | cWW | |
| 6 | IL_9H3G_112 | 9H3G | 0.0804 | 0 | A | LSU rRNA | U | 2685 | G | 2686 | U | 2687 | G | 2688 | G | 2689 | * | C | 2665 | A | 2666 | A | 2667 | cWW | tSH | cWW | ||
| 7 | IL_9AXU_092 | 9AXU | 0.0779 | 0 | 2 | LSU rRNA | A | 2781 | G | 2782 | U | 2783 | A | 2784 | G | 2785 | * | C | 2761 | A | 2762 | U | 2763 | cWW | tSH | cWW | ||
| 8 | IL_9E6Q_081 | 9E6Q | 0.0933 | 0 | Isolated tHS basepair with bulges (H) | 1 | LSU rRNA | C | 2429 | G | 2430 | U | 2431 | A | 2432 | G | 2433 | * | C | 2409 | A | 2410 | G | 2411 | cWW | tSH | cWW | |
| 9 | IL_4WF9_086 | 4WF9 | 0.2317 | 0 | Isolated tHS basepair with bulges | X | LSU rRNA | C | 2344 | A | 2345 | U | 2346 | A | 2347 | G | 2348 | * | C | 2324 | A | 2325 | G | 2326 | cWW | tSH | cWW | |
| 10 | IL_4V9F_080 | 4V9F | 0.2814 | 0 | Isolated tHS basepair with bulges | 0 | LSU rRNA | C | 2351 | G | 2352 | A | 2353 | A | 2354 | G | 2355 | * | C | 2331 | A | 2332 | G | 2333 | cWW | tSH | cWW | |
| 11 | IL_9DFE_088 | 9DFE | 0.4292 | 0 | 1A | LSU rRNA | C | 2317 | G | 2318 | G | 2319 | A | 2320 | G | 2321 | * | C | 2297 | A | 2298 | G | 2299 | cWW | tSH | cWW | ||
| 12 | IL_8B0X_147 | 8B0X | 0.7464 | 0 | a | LSU rRNA | A | 2321 | G | 2322 | G | 2323 | U | 2324 | U | 2325 | * | A | 2301 | A | 2302 | U | 2303 | cWW | tSH | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUAG*CAU | 3 |
| UGUAG*CAA | 1 |
| AGUGG*CAU | 1 |
| CGUGG*CAG | 1 |
| UGUGG*CAA | 1 |
| CGUAG*CAG | 1 |
| CAUAG*CAG | 1 |
| CGAAG*CAG | 1 |
| CGGAG*CAG | 1 |
| AGGUU*AAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*A | 5 |
| GUG*A | 3 |
| AUA*A | 1 |
| GAA*A | 1 |
| GGA*A | 1 |
| GGU*A | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Isolated tHS basepair with bulges (3)
- Isolated tHS basepair with bulges (H) (2)
- Basepair signature
- cWW-tSH-L-cWW-L
- Heat map statistics
- Min 0.05 | Avg 0.31 | Max 0.95
Coloring options: