IL_28UM_022
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UM_022 not in the Motif Atlas
- Homologous match to IL_6CZR_406
- Geometric discrepancy: 0.5404
- The information below is about IL_6CZR_406
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_26564.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
28UM|1|A|G|450
28UM|1|A|A|451
28UM|1|A|A|452
28UM|1|A|G|453
28UM|1|A|G|454
28UM|1|A|G|455
*
28UM|1|A|C|477
28UM|1|A|A|478
28UM|1|A|U|479
28UM|1|A|U|480
28UM|1|A|G|481
28UM|1|A|A|482
28UM|1|A|C|483
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
Coloring options: