IL_28UM_025

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

28UM|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UM_025 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1268

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

28UM|1|A|C|569
28UM|1|A|G|570
28UM|1|A|U|571
28UM|1|A|A|572
28UM|1|A|A|573
28UM|1|A|A|574
28UM|1|A|G|575
*
28UM|1|A|C|880
28UM|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17