IL_28UM_051

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UM_051 not in the Motif Atlas

Geometric match to IL_8B0X_051

Geometric discrepancy: 0.0871

The information below is about IL_8B0X_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

28UM|1|A|C|1129
28UM|1|A|A|1130
28UM|1|A|G|1131
28UM|1|A|C|1132
*
28UM|1|A|G|1142
28UM|1|A|G|1143

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9