3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
CAGC*GG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8B0X_051 not in the Motif Atlas
Homologous match to IL_5J7L_052
Geometric discrepancy: 0.1596
The information below is about IL_5J7L_052
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_15052.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
8

Unit IDs

8B0X|1|A|C|1129
8B0X|1|A|A|1130
8B0X|1|A|G|1131
8B0X|1|A|C|1132
*
8B0X|1|A|G|1142
8B0X|1|A|G|1143

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S9

Coloring options:


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