IL_28UM_055
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CGCUC*GCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28UM_055 not in the Motif Atlas
- Geometric match to IL_8B0X_153
- Geometric discrepancy: 0.2962
- The information below is about IL_8B0X_153
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
28UM|1|A|C|1259
28UM|1|A|G|1260
28UM|1|A|C|1261
28UM|1|A|U|1262
28UM|1|A|C|1263
*
28UM|1|A|G|1272
28UM|1|A|C|1273
28UM|1|A|A|1274
28UM|1|A|A|1275
28UM|1|A|G|1276
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
Coloring options: