3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8B0X_153 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.119
The information below is about IL_5J7L_338
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8B0X|1|a|C|2470
8B0X|1|a|C|2471
8B0X|1|a|A|2472
8B0X|1|a|A|2473
8B0X|1|a|G|2474
*
8B0X|1|a|C|2484
8B0X|1|a|G|2485
8B0X|1|a|A|2486
8B0X|1|a|C|2487
8B0X|1|a|G|2488

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain l
50S ribosomal protein L16

Coloring options:


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