IL_28UM_108

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

28UM|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28UM_108 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.176

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

28UM|1|a|C|1208
28UM|1|a|U|1209
28UM|1|a|G|1210
28UM|1|a|C|1211
28UM|1|a|G|1212
28UM|1|a|A|1213
28UM|1|a|A|1214
28UM|1|a|G|1215
*
28UM|1|a|U|1234
28UM|1|a|G|1235
28UM|1|a|G|1236
28UM|1|a|A|1237
28UM|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20