IL_28ZU_072

3D structure

PDB id

28ZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with Kozak mRNA and eIF1A W70A mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGC*(OMG)AGG

Length

9 nucleotides

Bulged bases

28ZU|1|S2|U|1397

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28ZU_072 not in the Motif Atlas

Geometric match to IL_8GLP_337

Geometric discrepancy: 0.0882

The information below is about IL_8GLP_337

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

28ZU|1|S2|C|1395
28ZU|1|S2|A|1396
28ZU|1|S2|U|1397
28ZU|1|S2|G|1398
28ZU|1|S2|C|1399
*
28ZU|1|S2|OMG|1447
28ZU|1|S2|A|1448
28ZU|1|S2|G|1449
28ZU|1|S2|G|1450

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SR

40S ribosomal protein S17

Chain SU

40S ribosomal protein S20

Chain Sg

Receptor of activated protein C kinase 1