IL_28ZV_010

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)*AUUCGA

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZV|1|S2|U|115
28ZV|1|S2|OMU|116
28ZV|1|S2|C|117
28ZV|1|S2|C|118
28ZV|1|S2|PSU|119
28ZV|1|S2|U|120
28ZV|1|S2|OMU|121
*
28ZV|1|S2|A|343
28ZV|1|S2|U|344
28ZV|1|S2|U|345
28ZV|1|S2|C|346
28ZV|1|S2|G|347
28ZV|1|S2|A|348

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

Small ribosomal subunit protein uS17