IL_28ZV_012

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

28ZV|1|S2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZV|1|S2|G|145
28ZV|1|S2|G|146
28ZV|1|S2|A|147
28ZV|1|S2|U|148
28ZV|1|S2|A|149
28ZV|1|S2|A|150
28ZV|1|S2|C|151
*
28ZV|1|S2|G|167
28ZV|1|S2|C|168
28ZV|1|S2|U|169
28ZV|1|S2|A|170
28ZV|1|S2|A|171
28ZV|1|S2|OMU|172
28ZV|1|S2|A|173
28ZV|1|S2|OMC|174

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24