IL_28ZV_033

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

28ZV|1|S2|A|628, 28ZV|1|S2|U|630, 28ZV|1|S2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZV|1|S2|G|611
28ZV|1|S2|U|612
28ZV|1|S2|G|613
28ZV|1|S2|C|614
28ZV|1|S2|C|615
28ZV|1|S2|A|616
28ZV|1|S2|G|617
*
28ZV|1|S2|C|624
28ZV|1|S2|G|625
28ZV|1|S2|G|626
28ZV|1|S2|U|627
28ZV|1|S2|A|628
28ZV|1|S2|A|629
28ZV|1|S2|U|630
28ZV|1|S2|U|631
28ZV|1|S2|C|632

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain B

mRNA

Chain H

Eukaryotic translation initiation factor 1A, X-chromosomal

Chain SD

40S ribosomal protein S3

Chain SX

40S ribosomal protein S23

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein