IL_28ZX_046

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

28ZX|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28ZX_046 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.0806

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

28ZX|1|S2|G|925
28ZX|1|S2|A|926
28ZX|1|S2|C|927
*
28ZX|1|S2|G|1014
28ZX|1|S2|U|1015
28ZX|1|S2|U|1016
28ZX|1|S2|U|1017

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27

Chain c

Eukaryotic translation initiation factor 3 subunit C