IL_28ZX_059

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

28ZX|1|S2|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28ZX_059 not in the Motif Atlas

Homologous match to IL_9PN5_196

Geometric discrepancy: 0.0757

The information below is about IL_9PN5_196

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

28ZX|1|S2|G|1206
28ZX|1|S2|G|1207
28ZX|1|S2|A|1208
*
28ZX|1|S2|U|1691
28ZX|1|S2|PSU|1692

Current chains

Chain S2

18S rRNA

Nearby chains

Chain B

mRNA_Kozak

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26