IL_28ZX_083
3D structure
- PDB id
- 28ZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (Kozak_1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- G(OMC)CC*GUA(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28ZX_083 not in the Motif Atlas
- Homologous match to IL_9H3G_234
- Geometric discrepancy: 0.0583
- The information below is about IL_9H3G_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.5
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
28ZX|1|S2|G|1702
28ZX|1|S2|OMC|1703
28ZX|1|S2|C|1704
28ZX|1|S2|C|1705
*
28ZX|1|S2|G|1829
28ZX|1|S2|U|1830
28ZX|1|S2|A|1831
28ZX|1|S2|6MZ|1832
28ZX|1|S2|C|1833
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain B
- mRNA_Kozak
- Chain G
- Transfer RNA; tRNA
- Chain H
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain Ln
- 60S ribosomal protein L41
Coloring options: