IL_2AAR_028

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUGUAG*CGAAGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_028 not in the Motif Atlas

Homologous match to IL_4WF9_031

Geometric discrepancy: 0.432

The information below is about IL_4WF9_031

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_94128.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2AAR|1|0|C|869
2AAR|1|0|C|870
2AAR|1|0|U|871
2AAR|1|0|G|872
2AAR|1|0|U|873
2AAR|1|0|A|874
2AAR|1|0|G|875
*
2AAR|1|0|C|927
2AAR|1|0|G|928
2AAR|1|0|A|929
2AAR|1|0|A|930
2AAR|1|0|G|931
2AAR|1|0|G|932
2AAR|1|0|G|933

Current chains

Chain 0

23S ribosomal RNA

Nearby chains