IL_2AAR_029

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CUCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_029 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.3781

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

2AAR|1|0|G|875
2AAR|1|0|A|876
2AAR|1|0|G|877
*
2AAR|1|0|C|924
2AAR|1|0|U|925
2AAR|1|0|C|926
2AAR|1|0|C|927

Current chains

Chain 0

23S ribosomal RNA

Nearby chains