IL_2AAR_036

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

2AAR|1|0|U|1023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_036 not in the Motif Atlas

Geometric match to IL_5TBW_050

Geometric discrepancy: 0.2197

The information below is about IL_5TBW_050

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

2AAR|1|0|A|1022
2AAR|1|0|U|1023
2AAR|1|0|G|1024
*
2AAR|1|0|C|1160
2AAR|1|0|U|1161

Current chains

Chain 0

23S ribosomal RNA

Nearby chains