IL_2AAR_044

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

2AAR|1|0|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_044 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3642

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|C|1210
2AAR|1|0|G|1211
2AAR|1|0|U|1212
2AAR|1|0|U|1213
*
2AAR|1|0|A|1259
2AAR|1|0|A|1260
2AAR|1|0|G|1261
2AAR|1|0|U|1262
2AAR|1|0|G|1263

Current chains

Chain 0

23S ribosomal RNA

Nearby chains