IL_2AAR_048

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_048 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0992

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

2AAR|1|0|A|1275
2AAR|1|0|U|1276
2AAR|1|0|G|1277
2AAR|1|0|A|1278
2AAR|1|0|G|1279
2AAR|1|0|U|1280
2AAR|1|0|A|1281
2AAR|1|0|A|1282
*
2AAR|1|0|U|1994
2AAR|1|0|G|1995
2AAR|1|0|A|1996
2AAR|1|0|A|1997
2AAR|1|0|A|1998
2AAR|1|0|U|1999
2AAR|1|0|U|2000

Current chains

Chain 0

23S ribosomal RNA

Nearby chains