IL_2AAR_049

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

2AAR|1|0|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_049 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.1149

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|G|1332
2AAR|1|0|G|1333
2AAR|1|0|A|1334
2AAR|1|0|A|1335
2AAR|1|0|G|1336
*
2AAR|1|0|C|1344
2AAR|1|0|G|1345
2AAR|1|0|C|1346

Current chains

Chain 0

23S ribosomal RNA

Nearby chains